| Variant | Mutation | Mut count | Country count | Continent count | First date |
|---|---|---|---|---|---|
| LF.7.9.1 | S:-24L | 6 | 3 | 2 | 2025-05-30 |
| LF.7.9.1 | S:I212L | 4 | 2 | 2 | 2025-05-30 |
| LF.7.9.1 | S:S27A | 5 | 3 | 2 | 2025-05-30 |
| LF.7.9.2 | ORF1a:V1199F | 8 | 2 | 2 | 2025-06-05 |
| LP.8.1.1 | N:K38R | 5 | 3 | 2 | 2025-06-11 |
| LP.8.1.1 | ORF1a:A385V | 4 | 3 | 2 | 2025-06-05 |
| LP.8.1.1 | ORF1a:T1890I | 5 | 3 | 2 | 2025-06-11 |
| LP.8.1.1 | ORF1b:D1869G | 5 | 4 | 2 | 2025-05-31 |
| LP.8.1.1 | ORF3a:T151I | 4 | 4 | 2 | 2025-06-21 |
| LP.8.1.1 | ORF9b:N35D | 5 | 3 | 2 | 2025-06-11 |
| LP.8.1.1 | S:D745A | 4 | 3 | 2 | 2025-06-05 |
| LP.8.1.1 | S:E493Q | 5 | 2 | 2 | 2025-06-07 |
| LP.8.1.1 | S:P486F | 6 | 2 | 2 | 2025-05-31 |
| LP.8.1.1 | S:T356K | 7 | 4 | 3 | 2025-05-27 |
| MC.10.2.1 | ORF1a:P3371S | 4 | 3 | 2 | 2025-06-10 |
| NB.1.8.1 | M:H3D | 14 | 3 | 3 | 2025-05-30 |
| NB.1.8.1 | M:L29F | 4 | 4 | 2 | 2025-06-19 |
| NB.1.8.1 | N:A134V | 4 | 3 | 2 | 2025-06-09 |
| NB.1.8.1 | N:L167F | 4 | 3 | 2 | 2025-06-16 |
| NB.1.8.1 | N:P365L | 10 | 3 | 3 | 2025-06-02 |
| NB.1.8.1 | N:Q229K | 4 | 3 | 2 | 2025-06-02 |
| NB.1.8.1 | N:T271I | 5 | 4 | 2 | 2025-05-29 |
| NB.1.8.1 | ORF1a:A964V | 4 | 3 | 3 | 2025-05-28 |
| NB.1.8.1 | ORF1a:E87D | 6 | 2 | 2 | 2025-05-27 |
| NB.1.8.1 | ORF1a:F3201L | 6 | 4 | 3 | 2025-06-03 |
| NB.1.8.1 | ORF1a:G934D | 4 | 2 | 2 | 2025-06-02 |
| NB.1.8.1 | ORF1a:I573T | 5 | 4 | 2 | 2025-06-02 |
| NB.1.8.1 | ORF1a:K1895N | 9 | 3 | 3 | 2025-05-28 |
| NB.1.8.1 | ORF1a:L590F | 5 | 2 | 2 | 2025-06-03 |
| NB.1.8.1 | ORF1a:Q501R | 5 | 4 | 3 | 2025-06-09 |
| NB.1.8.1 | ORF1a:R2860I | 4 | 2 | 2 | 2025-06-02 |
| NB.1.8.1 | ORF1a:T1017I | 4 | 3 | 2 | 2025-05-28 |
| NB.1.8.1 | ORF1a:T1589I | 7 | 2 | 2 | 2025-06-12 |
| NB.1.8.1 | ORF1a:T1788M | 8 | 4 | 2 | 2025-06-19 |
| NB.1.8.1 | ORF1a:T1822I | 5 | 3 | 3 | 2025-06-03 |
| NB.1.8.1 | ORF1a:T2021I | 8 | 2 | 2 | 2025-06-09 |
| NB.1.8.1 | ORF1a:T727I | 5 | 2 | 2 | 2025-05-27 |
| NB.1.8.1 | ORF1b:A176V | 5 | 2 | 2 | 2025-06-09 |
| NB.1.8.1 | ORF1b:E867D | 4 | 4 | 2 | 2025-05-31 |
| NB.1.8.1 | ORF1b:S1974N | 5 | 2 | 2 | 2025-06-12 |
| NB.1.8.1 | ORF1b:S638N | 4 | 4 | 2 | 2025-06-02 |
| NB.1.8.1 | ORF1b:T635M | 4 | 2 | 2 | 2025-05-27 |
| NB.1.8.1 | ORF1b:V1644I | 6 | 2 | 2 | 2025-05-27 |
| NB.1.8.1 | ORF3a:K21N | 9 | 3 | 2 | 2025-05-31 |
| NB.1.8.1 | ORF3a:P104L | 4 | 2 | 2 | 2025-06-26 |
| NB.1.8.1 | ORF3a:P25L | 5 | 2 | 2 | 2025-06-06 |
| NB.1.8.1 | ORF3a:V97I | 4 | 2 | 2 | 2025-05-28 |
| NB.1.8.1 | ORF6:L61V | 29 | 3 | 2 | 2025-06-01 |
| NB.1.8.1 | ORF7b:L19F | 4 | 3 | 2 | 2025-06-22 |
| NB.1.8.1 | ORF7b:S31L | 5 | 3 | 3 | 2025-06-02 |
| NB.1.8.1 | ORF8:K68E | 5 | 4 | 4 | 2025-06-03 |
| NB.1.8.1 | S:A67S | 8 | 2 | 2 | 2025-06-04 |
| NB.1.8.1 | S:K460N | 6 | 4 | 3 | 2025-06-13 |
| NB.1.8.1 | S:L10I | 7 | 3 | 2 | 2025-05-28 |
| NB.1.8.1 | S:L456F | 4 | 3 | 3 | 2025-06-13 |
| NB.1.8.1 | S:N417K | 13 | 2 | 2 | 2025-05-29 |
| NB.1.8.1 | S:Q779E | 6 | 2 | 2 | 2025-06-02 |
| NB.1.8.1 | S:S221L | 5 | 3 | 3 | 2025-06-16 |
| NB.1.8.1 | S:S435A | 33 | 5 | 4 | 2025-05-29 |
| NB.1.8.1 | S:S455L | 4 | 3 | 3 | 2025-06-13 |
| NT.2.1 | ORF1a:L3606F | 7 | 4 | 2 | 2025-06-02 |
| NW.1 | ORF3a:N82Y | 20 | 4 | 2 | 2025-06-01 |
| NW.1.2 | ORF1a:V86I | 4 | 3 | 2 | 2025-06-23 |
| NW.1.2 | S:S680Y | 15 | 2 | 2 | 2025-06-13 |
| NY.13 | ORF1b:T2432I | 5 | 3 | 2 | 2025-06-12 |
| NY.13 | ORF3a:L15F | 4 | 3 | 2 | 2025-06-05 |
| NY.15 | ORF3a:I63T | 5 | 2 | 2 | 2025-06-03 |
| NY.15 | S:-24L | 11 | 3 | 2 | 2025-06-10 |
| NY.15 | S:-25P | 10 | 3 | 2 | 2025-06-10 |
| NY.15 | S:-26P | 11 | 3 | 2 | 2025-06-10 |
| NY.15 | S:-31S | 12 | 4 | 2 | 2025-06-10 |
| NY.15 | S:I19T | 10 | 3 | 2 | 2025-06-10 |
| NY.15 | S:P1162S | 6 | 2 | 2 | 2025-06-16 |
| NY.15 | S:S27A | 11 | 3 | 2 | 2025-06-10 |
| NY.15 | S:T21R | 10 | 3 | 2 | 2025-06-10 |
| NY.18 | ORF1a:P2018S | 14 | 3 | 2 | 2025-05-27 |
| NY.18 | ORF1b:T2488M | 6 | 2 | 2 | 2025-05-29 |
| NY.18 | S:A123S | 18 | 4 | 1 | 2025-05-29 |
| NY.3 | ORF1a:E4388K | 4 | 3 | 2 | 2025-06-05 |
| NY.3 | S:-24L | 5 | 3 | 2 | 2025-06-10 |
| NY.3 | S:-25P | 4 | 2 | 2 | 2025-06-10 |
| NY.3 | S:-26P | 5 | 3 | 2 | 2025-06-10 |
| NY.3 | S:D142G | 4 | 3 | 2 | 2025-06-10 |
| NY.3 | S:S27A | 5 | 3 | 2 | 2025-06-10 |
| NY.7 | ORF1b:P2321L | 11 | 4 | 2 | 2025-06-10 |
| NY.7.1 | S:N185T | 4 | 2 | 2 | 2025-06-11 |
| NY.9 | S:-31S | 5 | 3 | 2 | 2025-06-05 |
| PE.1.4 | ORF1a:H2659Y | 9 | 2 | 2 | 2025-06-10 |
| PE.1.4 | ORF1a:I841V | 7 | 2 | 2 | 2025-06-11 |
| PE.1.4 | ORF8:Q72H | 9 | 2 | 2 | 2025-06-10 |
| PF.1 | ORF1b:E1288D | 7 | 4 | 3 | 2025-05-27 |
| PF.2.2.1 | ORF1a:T1682I | 4 | 2 | 2 | 2025-06-09 |
| PF.2.3 | ORF1a:S2433P | 12 | 3 | 2 | 2025-05-27 |
| PQ.1 | ORF1a:F1248L | 5 | 2 | 2 | 2025-05-31 |
| PQ.1 | ORF1a:L2250V | 4 | 2 | 2 | 2025-05-31 |
| PQ.1 | ORF1a:Y1141H | 4 | 2 | 2 | 2025-05-30 |
| PQ.1 | ORF1b:P1001S | 4 | 3 | 2 | 2025-06-05 |
| PQ.1 | S:L50S | 11 | 2 | 2 | 2025-05-30 |
| PQ.10 | S:L456F | 4 | 2 | 2 | 2025-05-29 |
| PQ.10.1 | ORF1a:G519C | 4 | 2 | 2 | 2025-06-30 |
| PQ.10.1 | ORF1b:K82R | 6 | 3 | 2 | 2025-06-11 |
| PQ.10.1 | S:S221L | 6 | 3 | 2 | 2025-06-11 |
| PQ.11 | ORF1a:E4388K | 4 | 2 | 2 | 2025-06-08 |
| PQ.14 | ORF1a:G519S | 6 | 4 | 3 | 2025-06-18 |
| PQ.14 | ORF1a:V2862M | 5 | 2 | 2 | 2025-05-27 |
| PQ.14 | ORF3a:G251C | 6 | 2 | 2 | 2025-06-08 |
| PQ.14 | ORF3a:T34M | 5 | 2 | 2 | 2025-05-27 |
| PQ.14 | S:T572I | 6 | 3 | 3 | 2025-06-18 |
| PQ.17 | N:P279S | 6 | 5 | 3 | 2025-06-30 |
| PQ.17 | ORF1a:A3143V | 4 | 3 | 3 | 2025-06-06 |
| PQ.17 | ORF1a:A4257V | 16 | 9 | 4 | 2025-06-09 |
| PQ.17 | ORF1a:E4388K | 4 | 2 | 2 | 2025-06-26 |
| PQ.17 | ORF3a:A72S | 4 | 3 | 3 | 2025-06-20 |
| PQ.17 | S:-483V | 4 | 3 | 3 | 2025-06-02 |
| PQ.2 | N:-31E | 4 | 2 | 2 | 2025-06-05 |
| PQ.2 | N:-32R | 4 | 2 | 2 | 2025-06-05 |
| PQ.2 | N:A359S | 5 | 4 | 2 | 2025-05-28 |
| PQ.2 | N:E136D | 6 | 2 | 2 | 2025-06-15 |
| PQ.2 | ORF1a:A2850T | 5 | 4 | 2 | 2025-05-28 |
| PQ.2 | ORF1a:T1055I | 4 | 2 | 2 | 2025-06-19 |
| PQ.2 | ORF1a:T1760I | 4 | 2 | 2 | 2025-06-10 |
| PQ.2 | ORF3a:E241Q | 5 | 2 | 2 | 2025-06-04 |
| PQ.2 | ORF3a:N144Y | 5 | 3 | 2 | 2025-06-05 |
| PQ.2 | ORF3a:Q213K | 4 | 3 | 3 | 2025-05-28 |
| PQ.2 | ORF3a:T190I | 11 | 6 | 4 | 2025-05-27 |
| PQ.2 | ORF9b:-27E | 4 | 2 | 2 | 2025-06-05 |
| PQ.2 | ORF9b:-28N | 4 | 2 | 2 | 2025-06-05 |
| PQ.2 | S:-211N | 7 | 2 | 2 | 2025-06-05 |
| PQ.2 | S:-483V | 6 | 4 | 3 | 2025-05-31 |
| PQ.2 | S:I212L | 8 | 3 | 2 | 2025-06-05 |
| PQ.2 | S:K679N | 5 | 3 | 3 | 2025-06-05 |
| PQ.2 | S:N417K | 7 | 2 | 2 | 2025-07-02 |
| PQ.2 | S:R681H | 4 | 4 | 4 | 2025-05-29 |
| PQ.2 | S:S446T | 5 | 4 | 2 | 2025-05-28 |
| PQ.2.1 | ORF3a:I20T | 4 | 2 | 2 | 2025-06-18 |
| PQ.4 | S:I478T | 4 | 2 | 2 | 2025-06-05 |
| PQ.4 | S:K679N | 5 | 4 | 2 | 2025-06-02 |
| PQ.4 | S:T572I | 6 | 4 | 2 | 2025-05-30 |
| PQ.5 | S:I478T | 5 | 4 | 3 | 2025-05-27 |
| PQ.7 | ORF1a:M3684T | 4 | 3 | 3 | 2025-06-20 |
| PY.1 | ORF1a:L3606F | 8 | 4 | 3 | 2025-05-28 |
| PY.1 | ORF1a:M85V | 4 | 3 | 2 | 2025-06-03 |
| PY.1 | ORF7b:L19F | 10 | 2 | 2 | 2025-05-27 |
| PY.1 | S:K460N | 4 | 3 | 2 | 2025-06-04 |
| PY.1 | S:K478T | 10 | 4 | 3 | 2025-05-27 |
| PY.1 | S:K481N | 15 | 4 | 2 | 2025-05-27 |
| PY.1 | S:K484E | 10 | 3 | 2 | 2025-05-27 |
| PY.1 | S:K679R | 21 | 2 | 2 | 2025-05-28 |
| PY.1 | S:N477S | 8 | 2 | 2 | 2025-05-27 |
| PY.1 | S:P486F | 9 | 3 | 2 | 2025-05-27 |
| PY.1 | S:V1264L | 4 | 2 | 2 | 2025-06-13 |
| PY.1.1 | ORF1a:M3862I | 15 | 6 | 4 | 2025-06-09 |
| PY.1.1 | S:A435S | 13 | 6 | 4 | 2025-06-09 |
| PY.1.1.1 | ORF1a:E4388K | 6 | 2 | 2 | 2025-06-26 |
| PY.2 | ORF8:K68E | 9 | 2 | 2 | 2025-05-28 |
| QA.2 | ORF1a:E233K | 8 | 2 | 2 | 2025-05-28 |
| QA.2 | ORF1a:K3353R | 4 | 2 | 2 | 2025-05-28 |
| QA.2 | ORF1a:P4120S | 4 | 2 | 2 | 2025-05-28 |
| QA.2 | ORF9b:A57V | 4 | 2 | 2 | 2025-05-28 |
| QA.2 | S:A1174V | 4 | 2 | 2 | 2025-05-28 |
| QA.2 | S:K484E | 11 | 2 | 2 | 2025-05-28 |
| QA.2 | S:T572I | 7 | 2 | 2 | 2025-05-27 |
| QA.3 | ORF8:P38S | 4 | 2 | 2 | 2025-05-27 |
| QA.3 | S:K484E | 11 | 2 | 2 | 2025-05-28 |
| QA.4 | ORF1a:A3357T | 4 | 2 | 2 | 2025-05-27 |
| QA.4 | ORF1a:L890V | 4 | 2 | 2 | 2025-05-27 |
| QA.4 | ORF1a:T4090A | 4 | 2 | 2 | 2025-05-27 |
| QA.4 | ORF3a:T89I | 4 | 2 | 2 | 2025-05-27 |
| QA.5 | ORF1a:P1158L | 4 | 2 | 2 | 2025-05-28 |
| QC.1 | ORF3a:A103T | 5 | 6 | 3 | 2025-06-06 |
| XEC.18.2 | ORF1a:A2784T | 4 | 4 | 2 | 2025-06-02 |
| XEC.18.2 | S:A575S | 4 | 4 | 2 | 2025-06-02 |
| XEC.25.1 | S:D839E | 5 | 2 | 2 | 2025-07-03 |
| XFC | ORF1a:Y1536H | 6 | 3 | 2 | 2025-06-11 |
| XFC.1 | ORF1a:K3353R | 4 | 3 | 2 | 2025-06-27 |
| XFC.1 | ORF1a:S549F | 6 | 2 | 2 | 2025-06-25 |
| XFC.1 | ORF1b:A1547S | 13 | 2 | 2 | 2025-06-25 |
| XFC.1 | ORF1b:Q1546H | 9 | 4 | 3 | 2025-06-17 |
| XFC.1 | ORF7a:I103V | 9 | 4 | 3 | 2025-06-17 |
| XFG | ORF1a:A4357V | 4 | 2 | 2 | 2025-05-29 |
| XFG | ORF1a:I1005V | 4 | 3 | 3 | 2025-06-06 |
| XFG | ORF1a:I842T | 5 | 3 | 2 | 2025-05-28 |
| XFG | ORF1a:L3736F | 15 | 5 | 2 | 2025-05-27 |
| XFG | ORF1a:M4390T | 5 | 2 | 2 | 2025-06-06 |
| XFG | ORF1a:P1640S | 33 | 6 | 2 | 2025-05-29 |
| XFG | ORF1a:V1169I | 6 | 3 | 2 | 2025-06-13 |
| XFG | ORF1b:D2352N | 6 | 3 | 2 | 2025-06-13 |
| XFG | ORF1b:L2497I | 7 | 3 | 2 | 2025-06-09 |
| XFG | ORF1b:T1404M | 5 | 2 | 2 | 2025-05-28 |
| XFG | ORF3a:G18V | 6 | 4 | 2 | 2025-06-02 |
| XFG | ORF7a:Q62* | 4 | 4 | 3 | 2025-05-28 |
| XFG | ORF7b:L19F | 15 | 3 | 2 | 2025-05-27 |
| XFG | S:A376T | 12 | 3 | 2 | 2025-06-01 |
| XFG | S:D1084G | 7 | 3 | 3 | 2025-06-06 |
| XFG | S:D253G | 9 | 5 | 2 | 2025-06-09 |
| XFG | S:F127L | 5 | 2 | 2 | 2025-06-19 |
| XFG | S:F375S | 10 | 3 | 2 | 2025-06-01 |
| XFG | S:H339G | 4 | 3 | 3 | 2025-05-28 |
| XFG | S:K440N | 5 | 3 | 2 | 2025-05-28 |
| XFG | S:K484E | 33 | 4 | 1 | 2025-05-30 |
| XFG | S:K554E | 4 | 2 | 2 | 2025-05-27 |
| XFG | S:N532K | 6 | 3 | 2 | 2025-06-13 |
| XFG | S:P486F | 21 | 5 | 2 | 2025-05-30 |
| XFG | S:Q677L | 4 | 3 | 2 | 2025-05-31 |
| XFG | S:R445V | 6 | 4 | 2 | 2025-05-28 |
| XFG | S:S446G | 6 | 4 | 2 | 2025-05-28 |
| XFG | S:S680F | 7 | 5 | 2 | 2025-06-02 |
| XFG | S:Y501N | 5 | 3 | 2 | 2025-05-28 |
| XFG | S:Y796D | 8 | 4 | 3 | 2025-05-30 |
| XFG.10 | ORF1a:L2122F | 18 | 3 | 2 | 2025-06-24 |
| XFG.12 | ORF1a:A2584V | 4 | 3 | 3 | 2025-06-23 |
| XFG.14 | ORF7a:E121Q | 23 | 7 | 2 | 2025-06-23 |
| XFG.2 | ORF1a:E4388K | 23 | 2 | 2 | 2025-06-08 |
| XFG.2 | ORF1a:M2365I | 5 | 2 | 2 | 2025-06-02 |
| XFG.2 | ORF1a:V488A | 7 | 5 | 4 | 2025-06-10 |
| XFG.2 | S:K403R | 5 | 3 | 2 | 2025-06-06 |
| XFG.2 | S:L5F | 6 | 2 | 2 | 2025-06-06 |
| XFG.2 | S:N417K | 10 | 2 | 2 | 2025-06-02 |
| XFG.3 | ORF1a:I222V | 5 | 4 | 2 | 2025-06-12 |
| XFG.3 | ORF1a:I4175T | 8 | 2 | 2 | 2025-05-31 |
| XFG.3 | ORF1a:P1862S | 4 | 2 | 2 | 2025-06-11 |
| XFG.3 | ORF1a:P1921L | 58 | 4 | 3 | 2025-05-28 |
| XFG.3 | ORF1a:R1973K | 11 | 6 | 4 | 2025-06-02 |
| XFG.3 | ORF1a:S17N | 13 | 3 | 2 | 2025-05-27 |
| XFG.3 | ORF1a:T1854I | 7 | 2 | 2 | 2025-06-11 |
| XFG.3 | ORF1a:T2093I | 5 | 3 | 2 | 2025-06-02 |
| XFG.3 | ORF1a:T2611I | 6 | 2 | 2 | 2025-06-13 |
| XFG.3 | ORF1a:T2710A | 4 | 3 | 2 | 2025-06-04 |
| XFG.3 | ORF1a:T403I | 6 | 2 | 2 | 2025-06-02 |
| XFG.3 | ORF1a:T708I | 13 | 6 | 4 | 2025-06-01 |
| XFG.3 | ORF1a:T951I | 6 | 3 | 3 | 2025-06-10 |
| XFG.3 | ORF1b:F1557L | 6 | 2 | 2 | 2025-06-13 |
| XFG.3 | ORF1b:G1541R | 6 | 3 | 2 | 2025-06-17 |
| XFG.3 | ORF1b:H604Y | 6 | 3 | 3 | 2025-06-11 |
| XFG.3 | ORF1b:K2255R | 4 | 3 | 3 | 2025-05-28 |
| XFG.3 | ORF1b:N1790S | 6 | 4 | 2 | 2025-06-12 |
| XFG.3 | ORF1b:P1005S | 4 | 3 | 2 | 2025-05-27 |
| XFG.3 | ORF1b:P1652S | 6 | 4 | 3 | 2025-06-02 |
| XFG.3 | ORF1b:R188Q | 4 | 3 | 3 | 2025-06-09 |
| XFG.3 | ORF1b:T1540I | 4 | 4 | 2 | 2025-05-27 |
| XFG.3 | ORF3a:E19G | 7 | 2 | 2 | 2025-05-30 |
| XFG.3 | ORF3a:H182Y | 4 | 2 | 2 | 2025-06-21 |
| XFG.3 | ORF7a:G38V | 4 | 4 | 3 | 2025-06-09 |
| XFG.3 | ORF7a:Q62H | 5 | 3 | 2 | 2025-06-04 |
| XFG.3 | ORF7b:L32F | 6 | 2 | 2 | 2025-06-02 |
| XFG.3 | ORF8:S54L | 8 | 3 | 2 | 2025-06-05 |
| XFG.3 | ORF8:S69P | 11 | 5 | 3 | 2025-06-17 |
| XFG.3 | ORF9b:-27E | 132 | 4 | 3 | 2025-06-04 |
| XFG.3 | S:A376T | 10 | 5 | 3 | 2025-05-28 |
| XFG.3 | S:A688V | 5 | 3 | 3 | 2025-06-02 |
| XFG.3 | S:E493Q | 5 | 2 | 2 | 2025-06-02 |
| XFG.3 | S:F375S | 8 | 5 | 3 | 2025-05-28 |
| XFG.3 | S:H505Y | 4 | 4 | 2 | 2025-06-11 |
| XFG.3 | S:L50S | 4 | 2 | 2 | 2025-05-30 |
| XFG.3 | S:M1229I | 4 | 2 | 2 | 2025-06-25 |
| XFG.3 | S:N405D | 4 | 2 | 2 | 2025-06-02 |
| XFG.3 | S:R498Q | 4 | 4 | 2 | 2025-06-04 |
| XFG.3 | S:R683Q | 4 | 3 | 3 | 2025-05-27 |
| XFG.3 | S:S60Y | 6 | 2 | 2 | 2025-06-13 |
| XFG.3.1 | ORF1a:T4083M | 4 | 3 | 2 | 2025-06-02 |
| XFG.3.1 | S:-211N | 20 | 2 | 2 | 2025-05-29 |
| XFG.3.1 | S:-24L | 5 | 3 | 2 | 2025-05-29 |
| XFG.3.1 | S:-25P | 4 | 2 | 2 | 2025-05-29 |
| XFG.3.1 | S:-26P | 4 | 3 | 2 | 2025-05-29 |
| XFG.3.1 | S:A376S | 4 | 3 | 2 | 2025-06-18 |
| XFG.3.1 | S:G268S | 4 | 3 | 2 | 2025-06-18 |
| XFG.3.1 | S:K403R | 4 | 2 | 2 | 2025-06-02 |
| XFG.3.1 | S:P31S | 6 | 2 | 2 | 2025-06-14 |
| XFG.3.1 | S:S27A | 5 | 3 | 2 | 2025-05-29 |
| XFG.3.3 | ORF1a:A1997V | 11 | 3 | 2 | 2025-06-23 |
| XFG.3.3 | ORF1a:L2062F | 18 | 6 | 3 | 2025-06-23 |
| XFG.3.3 | ORF1a:T1429I | 5 | 3 | 2 | 2025-07-08 |
| XFG.3.3 | ORF3a:V29I | 11 | 3 | 2 | 2025-06-23 |
| XFG.3.4 | ORF1a:G519S | 6 | 3 | 2 | 2025-06-24 |
| XFG.3.4 | ORF3a:L106F | 5 | 3 | 2 | 2025-06-24 |
| XFG.3.4.1 | ORF1a:P1921L | 37 | 3 | 3 | 2025-07-02 |
| XFG.3.4.1 | ORF1a:R1973K | 21 | 2 | 2 | 2025-06-04 |
| XFG.3.4.1 | S:-483V | 4 | 2 | 2 | 2025-07-11 |
| XFG.3.4.1 | S:G158R | 4 | 3 | 2 | 2025-07-12 |
| XFG.3.4.1 | S:K481N | 4 | 2 | 2 | 2025-06-18 |
| XFG.3.4.1 | S:P680S | 31 | 15 | 4 | 2025-06-24 |
| XFG.4 | M:A30T | 6 | 2 | 2 | 2025-06-04 |
| XFG.4 | ORF1a:A690V | 14 | 6 | 3 | 2025-06-10 |
| XFG.4 | ORF1a:E4388K | 15 | 3 | 2 | 2025-06-08 |
| XFG.4 | ORF1a:L3606F | 8 | 4 | 3 | 2025-06-03 |
| XFG.4 | ORF1b:A176V | 4 | 2 | 2 | 2025-06-09 |
| XFG.4 | ORF1b:H1087Y | 5 | 4 | 2 | 2025-06-17 |
| XFG.4 | ORF1b:R1915K | 6 | 3 | 2 | 2025-05-28 |
| XFG.4 | ORF1b:S997L | 256 | 23 | 6 | 2025-06-02 |
| XFG.4 | ORF9b:L64H | 9 | 5 | 3 | 2025-06-04 |
| XFG.4 | S:D487N | 11 | 2 | 2 | 2025-06-12 |
| XFG.4 | S:S446G | 7 | 2 | 2 | 2025-06-12 |
| XFG.4 | S:S680F | 6 | 4 | 4 | 2025-06-03 |
| XFG.4.1 | ORF1a:A690V | 7 | 4 | 3 | 2025-07-02 |
| XFG.4.1 | ORF3a:S253P | 4 | 4 | 2 | 2025-06-25 |
| XFG.4.1 | S:-211N | 8 | 3 | 3 | 2025-06-30 |
| XFG.4.1 | S:I212L | 8 | 3 | 3 | 2025-06-30 |
| XFG.4.1 | S:S27A | 11 | 2 | 2 | 2025-06-03 |
| XFG.5 | N:P364L | 5 | 2 | 2 | 2025-06-26 |
| XFG.5 | ORF1a:D2980G | 7 | 4 | 2 | 2025-06-04 |
| XFG.5 | ORF1a:E4388K | 15 | 3 | 2 | 2025-06-09 |
| XFG.5 | ORF1a:G298S | 4 | 3 | 3 | 2025-06-13 |
| XFG.5 | ORF1a:L27F | 4 | 2 | 2 | 2025-06-22 |
| XFG.5 | ORF1a:P1207S | 12 | 2 | 2 | 2025-06-08 |
| XFG.5 | ORF1a:P3952S | 4 | 2 | 2 | 2025-06-24 |
| XFG.5 | ORF1b:S1182L | 11 | 2 | 2 | 2025-06-26 |
| XFG.5 | ORF3a:G172C | 7 | 5 | 2 | 2025-05-29 |
| XFG.5 | ORF7a:D69E | 10 | 6 | 3 | 2025-06-15 |
| XFG.5 | ORF8:S67F | 12 | 2 | 2 | 2025-06-08 |
| XFG.5 | S:D487N | 4 | 2 | 2 | 2025-07-04 |
| XFG.5 | S:K679N | 5 | 2 | 2 | 2025-06-22 |
| XFG.5 | S:P486F | 4 | 2 | 2 | 2025-07-04 |
| XFG.6 | N:I379T | 12 | 8 | 4 | 2025-05-30 |
| XFG.7 | ORF1a:E4388K | 4 | 2 | 2 | 2025-06-15 |
| XFG.7 | ORF1a:K2029R | 21 | 7 | 2 | 2025-06-06 |
| XFG.7 | ORF1a:S3242G | 20 | 6 | 2 | 2025-06-06 |
| XFG.7 | S:N417K | 4 | 2 | 2 | 2025-06-30 |
| XFG.8 | ORF1a:E4388K | 5 | 2 | 2 | 2025-06-16 |
| XFG.8 | ORF1a:T1597I | 9 | 3 | 2 | 2025-06-30 |
| XFG.9 | ORF1a:E745D | 5 | 2 | 2 | 2025-06-27 |
| XFG.9 | ORF1b:T1655I | 4 | 2 | 2 | 2025-07-05 |
| XFG.9 | S:A845S | 5 | 2 | 2 | 2025-06-27 |
| XFN | ORF9b:M78T | 7 | 2 | 2 | 2025-05-31 |