Lineage XFG.3.1 branches

Lineage:

Branch #1
Root of XFG.3.1
Direct: 1 Total: 101 Countries: 17 Continents: 4 Date: 2025-04-11 → 2025-06-19
- Branch #2
  Nuc: A24813G
  AA: S:D1084G
  Direct: 18 Total: 100 Countries: 17 Continents: 4 Date: 2025-04-11 → 2025-06-19
  - Branch #3
    Nuc: C11653T
    Direct: 2 Total: 24 Countries: 5 Continents: 3 Date: 2025-05-20 → 2025-06-02
    - Branch #4
      Nuc: A13949G
      AA: ORF1b:D161G
      Direct: 0 Total: 22 Countries: 3 Continents: 2 Date: 2025-05-20 → 2025-06-02
      - Branch #5
        Nuc: C6318T
        AA: ORF1a:P2018L
        Direct: 1 Total: 20 Countries: 2 Continents: 2 Date: 2025-05-24 → 2025-06-02
        
        Branch #6
        AA: S:I212L
        Direct: 1 Total: 19 Countries: 1 Continents: 1 Date: 2025-05-24 → 2025-06-02
        
        Branch #7
        Nuc: T22813G
        AA: S:N417K
        Direct: 4 Total: 10 Countries: 1 Continents: 1 Date: 2025-05-24 → 2025-06-01
        
        Branch #8
        Nuc: C26529G
        AA: S:L212I, M:H3D
        Direct: 0 Total: 4 Countries: 1 Continents: 1 Date: 2025-05-26 → 2025-05-29
        
        Branch #9
        Nuc: G17064A, T17904C
        Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-29 → 2025-05-29
        
        Branch #10
        Nuc: T5239C, T13608C
        Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-26 → 2025-05-29
        
        Branch #11
        Nuc: C23741T
        Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-31 → 2025-06-01
        
        Branch #12
        Nuc: T13608C
        Direct: 1 Total: 4 Countries: 1 Continents: 1 Date: 2025-05-26 → 2025-06-01
        
        Branch #13
        Nuc: C28377A
        AA: N:A35E, ORF9b:R32S
        Direct: 1 Total: 3 Countries: 1 Continents: 1 Date: 2025-05-26 → 2025-06-01
        
        Branch #14
        Nuc: C29284T
        Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-26 → 2025-06-01
        
        Branch #15
        Nuc: G26577C
        AA: M:E19Q
        Direct: 2 Total: 4 Countries: 1 Continents: 1 Date: 2025-05-30 → 2025-06-02
        
        Branch #16
        Nuc: T9640C, C23741T
        Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-31 → 2025-05-31
      - Branch #17
        Nuc: C683T
        Direct: 2 Total: 2 Countries: 2 Continents: 2 Date: 2025-05-20 → 2025-05-31
  - Branch #18
    Nuc: C19979A
    AA: ORF1b:T2171N
    Direct: 7 Total: 21 Countries: 3 Continents: 1 Date: 2025-04-28 → 2025-06-10
    - Branch #19
      Nuc: C2595T, A25492C, C29719T
      AA: ORF1a:P777L, ORF3a:T34P
      Direct: 5 Total: 5 Countries: 1 Continents: 1 Date: 2025-05-21 → 2025-06-10
    - Branch #20
      Nuc: C2700T
      AA: ORF1a:T812I
      Direct: 5 Total: 5 Countries: 1 Continents: 1 Date: 2025-05-15 → 2025-06-04
    - Branch #21
      Nuc: C1385T, C3429T
      AA: ORF1a:H374Y, ORF1a:T1055I
      Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-06-06 → 2025-06-07
    - Branch #22
      Nuc: T3289C
      Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-31 → 2025-06-02
  - Branch #23
    Nuc: C29296T
    Direct: 6 Total: 8 Countries: 1 Continents: 1 Date: 2025-05-12 → 2025-06-14
    - Branch #24
      Nuc: C21653T
      AA: S:P31S
      Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-06-14 → 2025-06-14
  - Branch #25
    Nuc: G3251A, C3984T, T9412C, C21859T
    AA: ORF1a:D996N, ORF1a:T1240I
    Direct: 2 Total: 4 Countries: 1 Continents: 1 Date: 2025-05-07 → 2025-05-13
    - Branch #26
      Nuc: C11455T
      Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-09 → 2025-05-10
  - Branch #27
    Direct: 2 Total: 4 Countries: 2 Continents: 1 Date: 2025-04-22 → 2025-06-10
    - Branch #28
      Nuc: C13339T
      Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-19 → 2025-06-10
  - Branch #29
    Nuc: C26822T
    Direct: 4 Total: 4 Countries: 1 Continents: 1 Date: 2025-05-08 → 2025-05-21
  - Branch #30
    Nuc: T44C
    Direct: 1 Total: 3 Countries: 2 Continents: 2 Date: 2025-05-11 → 2025-06-12
    - Branch #31
      Nuc: T15521A, T21610C
      AA: ORF1b:F685Y
      Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-11 → 2025-05-15
  - Branch #32
    Nuc: C13225A
    Direct: 2 Total: 2 Countries: 2 Continents: 2 Date: 2025-05-12 → 2025-05-29
  - Branch #33
    Nuc: A23005T
    AA: S:K481N
    Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-06-13 → 2025-06-13
  - Branch #34
    Nuc: T29409C
    AA: N:I379T
    Direct: 2 Total: 2 Countries: 2 Continents: 1 Date: 2025-05-14 → 2025-05-24
  - Branch #35
    Nuc: C22329T
    AA: S:S256L
    Direct: 2 Total: 2 Countries: 2 Continents: 2 Date: 2025-05-12 → 2025-06-10
  - Branch #36
    Nuc: T27922C
    AA: ORF8:I10T
    Direct: 2 Total: 2 Countries: 2 Continents: 1 Date: 2025-05-16 → 2025-06-10
  - Branch #37
    Nuc: C18377T
    AA: ORF1b:T1637I
    Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-06 → 2025-05-06
  - Branch #38
    Nuc: A25439G
    AA: ORF3a:K16R
    Direct: 2 Total: 2 Countries: 1 Continents: 1 Date: 2025-05-07 → 2025-05-21