Samples since 14th September 2026

Region Total ST.1 % PJ.2.1 % TK.1 % TA.1 %
Asia / Hong Kong 10 0 0% 0 0% 0 0% 0 0%
Asia / Israel 15 1 7% 0 0% 1 7% 2 13%
Asia / Japan 8 0 0% 0 0% 0 0% 1 13%
Asia / Japan / Hiroshima 2 0 0% 0 0% 0 0% 0 0%
Asia / Japan / Saitama 4 0 0% 0 0% 0 0% 0 0%
Asia / Japan / Yamanashi 2 0 0% 0 0% 0 0% 1 50%
Asia / Singapore 57 0 0% 0 0% 0 0% 5 9%
Asia / South Korea 60 0 0% 0 0% 0 0% 1 2%
Asia / South Korea / Gwangju 4 0 0% 0 0% 0 0% 0 0%
Asia / Taiwan 20 0 0% 0 0% 0 0% 1 5%
Asia / Thailand 1 0 0% 0 0% 0 0% 0 0%
Asia / Thailand / Nakhon Phanom 1 0 0% 0 0% 0 0% 0 0%
Europe / France 9 2 22% 0 0% 1 11% 2 22%
Europe / France / Auvergne-Rhone-Alpes 9 2 22% 0 0% 1 11% 2 22%
Europe / France / Auvergne-Rhone-Alpes / Rhone 9 2 22% 0 0% 1 11% 2 22%
Europe / Germany 16 1 6% 0 0% 3 19% 2 13%
Europe / Germany / Baden-Wurttemberg 2 0 0% 0 0% 1 50% 0 0%
Europe / Germany / Bavaria 7 1 14% 0 0% 1 14% 0 0%
Europe / Germany / Brandenburg 1 0 0% 0 0% 0 0% 0 0%
Europe / Germany / North Rhine-Westphalia 6 0 0% 0 0% 1 17% 2 33%
Europe / Italy 11 3 27% 0 0% 2 18% 1 9%
Europe / Italy / Lombardy 5 2 40% 0 0% 1 20% 0 0%
Europe / Italy / Veneto 6 1 17% 0 0% 1 17% 1 17%
Europe / Netherlands 6 2 33% 0 0% 0 0% 0 0%
Europe / Netherlands / Gelderland 4 0 0% 0 0% 0 0% 0 0%
Europe / Netherlands / Noord-Holland 2 2 100% 0 0% 0 0% 0 0%
Europe / Russia 22 0 0% 0 0% 0 0% 2 9%
Europe / Russia / Astrakhan Oblast 1 0 0% 0 0% 0 0% 0 0%
Europe / Russia / Astrakhan Oblast / Astrakhan 1 0 0% 0 0% 0 0% 0 0%
Europe / Russia / Krasnodar Krai 3 0 0% 0 0% 0 0% 1 33%
Europe / Russia / Krasnodar Krai / Novorossiysk 2 0 0% 0 0% 0 0% 1 50%
Europe / Russia / Krasnodar Krai / Severskaya 1 0 0% 0 0% 0 0% 0 0%
Europe / Russia / Saint-Petersburg 16 0 0% 0 0% 0 0% 1 6%
Europe / Russia / Saint-Petersburg / Saint-Petersburg 16 0 0% 0 0% 0 0% 1 6%
Europe / Russia / Volgograd Oblast 2 0 0% 0 0% 0 0% 0 0%
Europe / Russia / Volgograd Oblast / Cherepovets 2 0 0% 0 0% 0 0% 0 0%
Europe / Slovenia 1 0 0% 0 0% 0 0% 0 0%
Europe / Spain 274 114 42% 20 7% 27 10% 14 5%
Europe / Spain / Andalusia 4 0 0% 0 0% 0 0% 0 0%
Europe / Spain / Andalusia / Cadiz 4 0 0% 0 0% 0 0% 0 0%
Europe / Spain / Asturias 61 21 34% 1 2% 9 15% 4 7%
Europe / Spain / Basque Country 143 79 55% 6 4% 11 8% 5 3%
Europe / Spain / Basque Country / Bizkaia 28 13 46% 0 0% 2 7% 0 0%
Europe / Spain / Basque Country / Donostia-San Sebastian 67 32 48% 2 3% 6 9% 3 4%
Europe / Spain / Basque Country / Vitoria-Gasteiz 48 34 71% 4 8% 3 6% 2 4%
Europe / Spain / Catalunya 48 11 23% 13 27% 4 8% 4 8%
Europe / Spain / Catalunya / Alella 1 0 0% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Arenys De Mar 1 1 100% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Argentona 1 0 0% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Badalona 21 4 19% 6 29% 2 10% 3 14%
Europe / Spain / Catalunya / Barbera Del Valles 1 0 0% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Barcelona 1 0 0% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Mataro 4 1 25% 2 50% 0 0% 0 0%
Europe / Spain / Catalunya / Montornes Del Valles 3 1 33% 2 67% 0 0% 0 0%
Europe / Spain / Catalunya / Pineda De Mar 1 1 100% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Premia De Mar 1 1 100% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Sant Adria De Besos 6 1 17% 0 0% 2 33% 0 0%
Europe / Spain / Catalunya / Sant Fost De Campsentelle 1 0 0% 1 100% 0 0% 0 0%
Europe / Spain / Catalunya / Santa Coloma De Gramenet 2 0 0% 0 0% 0 0% 0 0%
Europe / Spain / Catalunya / Teia 1 0 0% 1 100% 0 0% 0 0%
Europe / Spain / Catalunya / Vilanova Del Valles 3 1 33% 1 33% 0 0% 1 33%
Europe / Spain / Extremadura 3 0 0% 0 0% 2 67% 0 0%
Europe / Spain / Extremadura / Badajoz 3 0 0% 0 0% 2 67% 0 0%
Europe / Spain / Galicia 1 1 100% 0 0% 0 0% 0 0%
Europe / Spain / Galicia / Santiago de Compostela 1 1 100% 0 0% 0 0% 0 0%
Europe / Spain / Melilla 14 2 14% 0 0% 1 7% 1 7%
Europe / Ukraine 3 0 0% 0 0% 0 0% 0 0%
Europe / Ukraine / Kharkiv region 3 0 0% 0 0% 0 0% 0 0%
North America / Canada 172 2 1% 53 31% 6 3% 8 5%
North America / Canada / New Brunswick 25 0 0% 6 24% 0 0% 0 0%
North America / Canada / Ontario 147 2 1% 47 32% 6 4% 8 5%
North America / USA 295 7 2% 30 10% 1 0% 16 5%
North America / USA / Alaska 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Arizona 17 0 0% 0 0% 0 0% 0 0%
North America / USA / Arizona / Graham 4 0 0% 0 0% 0 0% 0 0%
North America / USA / Arizona / Maricopa 13 0 0% 0 0% 0 0% 0 0%
North America / USA / California 63 0 0% 2 3% 1 2% 5 8%
North America / USA / Connecticut 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Florida 13 0 0% 4 31% 0 0% 0 0%
North America / USA / Illinois 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Illinois / Cook County 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Kentucky 1 0 0% 1 100% 0 0% 0 0%
North America / USA / Maryland 21 0 0% 5 24% 0 0% 0 0%
North America / USA / Missouri 3 0 0% 0 0% 0 0% 0 0%
North America / USA / Nebraska 4 0 0% 0 0% 0 0% 0 0%
North America / USA / Nevada 31 0 0% 0 0% 0 0% 0 0%
North America / USA / Nevada / Clark 31 0 0% 0 0% 0 0% 0 0%
North America / USA / New Jersey 12 0 0% 4 33% 0 0% 2 17%
North America / USA / New York 84 5 6% 12 14% 0 0% 9 11%
North America / USA / New York / Albany 2 0 0% 0 0% 0 0% 1 50%
North America / USA / New York / New York 1 0 0% 0 0% 0 0% 1 100%
North America / USA / New York / New York City 61 3 5% 9 15% 0 0% 7 11%
North America / USA / New York / Onondaga 2 0 0% 1 50% 0 0% 0 0%
North America / USA / New York / Out-Of-State 1 0 0% 0 0% 0 0% 0 0%
North America / USA / New York / Saratoga 5 0 0% 1 20% 0 0% 0 0%
North America / USA / New York / Ulster 1 0 0% 0 0% 0 0% 0 0%
North America / USA / New York / Warren 1 0 0% 0 0% 0 0% 0 0%
North America / USA / North Carolina 4 0 0% 1 25% 0 0% 0 0%
North America / USA / Oklahoma 1 0 0% 1 100% 0 0% 0 0%
North America / USA / Oregon 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Pennsylvania 7 0 0% 0 0% 0 0% 0 0%
North America / USA / Pennsylvania / Philadelphia 7 0 0% 0 0% 0 0% 0 0%
North America / USA / Rhode Island 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Texas 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Texas / Denton 1 0 0% 0 0% 0 0% 0 0%
North America / USA / Virginia 18 0 0% 0 0% 0 0% 0 0%
North America / USA / Washington 9 2 22% 0 0% 0 0% 0 0%
North America / USA / Wyoming 1 0 0% 0 0% 0 0% 0 0%
Oceania / Australia 80 2 3% 3 4% 0 0% 0 0%
Oceania / Australia / New South Wales 28 0 0% 2 7% 0 0% 0 0%
Oceania / Australia / New South Wales / Sydney 28 0 0% 2 7% 0 0% 0 0%
Oceania / Australia / South Australia 41 1 2% 1 2% 0 0% 0 0%
Oceania / Australia / Western Australia 11 1 9% 0 0% 0 0% 0 0%
Oceania / New Zealand 13 0 0% 3 23% 2 15% 0 0%
Oceania / New Zealand / Auckland 1 0 0% 0 0% 0 0% 0 0%
Oceania / New Zealand / Bay of Plenty 1 0 0% 0 0% 0 0% 0 0%
Oceania / New Zealand / Canterbury 2 0 0% 0 0% 2 100% 0 0%
Oceania / New Zealand / Counties Manukau 3 0 0% 0 0% 0 0% 0 0%
Oceania / New Zealand / South Canterbury 3 0 0% 3 100% 0 0% 0 0%
Oceania / New Zealand / Southern 3 0 0% 0 0% 0 0% 0 0%
South America / Brazil 14 0 0% 0 0% 0 0% 0 0%
South America / Brazil / Federal District 9 0 0% 0 0% 0 0% 0 0%
South America / Brazil / Goias 5 0 0% 0 0% 0 0% 0 0%
South America / Brazil / Goias / Goiania 2 0 0% 0 0% 0 0% 0 0%
South America / Brazil / Goias / Luziania 1 0 0% 0 0% 0 0% 0 0%
South America / Brazil / Goias / Planaltina 1 0 0% 0 0% 0 0% 0 0%
South America / Brazil / Goias / Rio Verde 1 0 0% 0 0% 0 0% 0 0%

Last Updated: 12 October 2026 06:12 BST — Local: …

Table excludes airport surveillance samples from the USA and environmental samples from Germany. There may still be some others in the counts that shouldn't be there.

Acknowledgements

We gratefully acknowledge GISAID and the many data contributors around the world for sharing SARS-CoV-2 sequences.

This analysis makes use of the Nextclade CLI.
Aksamentov, I., Roemer, C., Hodcroft, E. B., & Neher, R. A., (2021). Nextclade: clade assignment, mutation calling and quality control for viral genomes. Journal of Open Source Software, 6(67), 3773, https://doi.org/10.21105/joss.03773

Special thanks to Josette Schoenmakers ( @josetteschoenma.bsky.social on BlueSky @JosetteSchoenma on Twitter) for the table concepts.